Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species.
Identifieur interne : 000E21 ( Main/Exploration ); précédent : 000E20; suivant : 000E22Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species.
Auteurs : Erica S. Lassiter [États-Unis] ; Carsten Russ [États-Unis] ; Chad Nusbaum [États-Unis] ; Qiandong Zeng [États-Unis] ; Amanda C. Saville [États-Unis] ; Rodrigo A. Olarte [États-Unis] ; Ignazio Carbone [États-Unis] ; Chia-Hui Hu [États-Unis] ; Andaine Seguin-Orlando [Danemark] ; Jose A. Samaniego [Danemark] ; Jeffrey L. Thorne [États-Unis] ; Jean B. Ristaino [États-Unis]Source :
- Current genetics [ 1432-0983 ] ; 2015.
Descripteurs français
- KwdFr :
- ADN mitochondrial (génétique), Analyse de séquence d'ADN (MeSH), Chimère (microbiologie), Colombie (MeSH), Génome mitochondrial (MeSH), Lycopersicon esculentum (microbiologie), Maladies des plantes (microbiologie), Mitochondries (génétique), Phylogenèse (MeSH), Phylogéographie (MeSH), Phytophthora (classification), Phytophthora (génétique), Phytophthora infestans (classification), Phytophthora infestans (génétique), Pérou (MeSH), Solanum tuberosum (microbiologie), Équateur (MeSH), Évolution biologique (MeSH).
- MESH :
- génétique : ADN mitochondrial, Mitochondries, Phytophthora, Phytophthora infestans.
- microbiologie : Chimère, Lycopersicon esculentum, Maladies des plantes, Solanum tuberosum.
- Analyse de séquence d'ADN, Colombie, Génome mitochondrial, Phylogenèse, Phylogéographie, Pérou, Équateur, Évolution biologique.
- Wicri :
English descriptors
- KwdEn :
- Biological Evolution (MeSH), Chimera (microbiology), Colombia (MeSH), DNA, Mitochondrial (genetics), Ecuador (MeSH), Genome, Mitochondrial (MeSH), Lycopersicon esculentum (microbiology), Mitochondria (genetics), Peru (MeSH), Phylogeny (MeSH), Phylogeography (MeSH), Phytophthora (classification), Phytophthora (genetics), Phytophthora infestans (classification), Phytophthora infestans (genetics), Plant Diseases (microbiology), Sequence Analysis, DNA (MeSH), Solanum tuberosum (microbiology).
- MESH :
- chemical , genetics : DNA, Mitochondrial.
- geographic : Colombia, Ecuador, Peru.
- classification : Phytophthora, Phytophthora infestans.
- genetics : Mitochondria, Phytophthora, Phytophthora infestans.
- microbiology : Chimera, Lycopersicon esculentum, Plant Diseases, Solanum tuberosum.
- Biological Evolution, Genome, Mitochondrial, Phylogeny, Phylogeography, Sequence Analysis, DNA.
Abstract
Phytophthora infestans is one of the most destructive plant pathogens of potato and tomato globally. The pathogen is closely related to four other Phytophthora species in the 1c clade including P. phaseoli, P. ipomoeae, P. mirabilis and P. andina that are important pathogens of other wild and domesticated hosts. P. andina is an interspecific hybrid between P. infestans and an unknown Phytophthora species. We have sequenced mitochondrial genomes of the sister species of P. infestans and examined the evolutionary relationships within the clade. Phylogenetic analysis indicates that the P. phaseoli mitochondrial lineage is basal within the clade. P. mirabilis and P. ipomoeae are sister lineages and share a common ancestor with the Ic mitochondrial lineage of P. andina. These lineages in turn are sister to the P. infestans and P. andina Ia mitochondrial lineages. The P. andina Ic lineage diverged much earlier than the P. andina Ia mitochondrial lineage and P. infestans. The presence of two mitochondrial lineages in P. andina supports the hybrid nature of this species. The ancestral state of the P. andina Ic lineage in the tree and its occurrence only in the Andean regions of Ecuador, Colombia and Peru suggests that the origin of this species hybrid in nature may occur there.
DOI: 10.1007/s00294-015-0480-3
PubMed: 25754775
PubMed Central: PMC4659649
Affiliations:
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Olarte</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695</wicri:regionArea><wicri:noRegion>27695</wicri:noRegion></affiliation></author><author><name sortKey="Carbone, Ignazio" sort="Carbone, Ignazio" uniqKey="Carbone I" first="Ignazio" last="Carbone">Ignazio Carbone</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695</wicri:regionArea><wicri:noRegion>27695</wicri:noRegion></affiliation></author><author><name sortKey="Hu, Chia Hui" sort="Hu, Chia Hui" uniqKey="Hu C" first="Chia-Hui" last="Hu">Chia-Hui Hu</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695</wicri:regionArea><wicri:noRegion>27695</wicri:noRegion></affiliation></author><author><name sortKey="Seguin Orlando, Andaine" sort="Seguin Orlando, Andaine" uniqKey="Seguin Orlando A" first="Andaine" last="Seguin-Orlando">Andaine Seguin-Orlando</name><affiliation wicri:level="3"><nlm:affiliation>Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.</nlm:affiliation><country xml:lang="fr">Danemark</country><wicri:regionArea>Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen</wicri:regionArea><placeName><settlement type="city">Copenhague</settlement><region type="région" nuts="2">Hovedstaden</region></placeName></affiliation></author><author><name sortKey="Samaniego, Jose A" sort="Samaniego, Jose A" uniqKey="Samaniego J" first="Jose A" last="Samaniego">Jose A. Samaniego</name><affiliation wicri:level="3"><nlm:affiliation>Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.</nlm:affiliation><country xml:lang="fr">Danemark</country><wicri:regionArea>Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen</wicri:regionArea><placeName><settlement type="city">Copenhague</settlement><region type="région" nuts="2">Hovedstaden</region></placeName></affiliation></author><author><name sortKey="Thorne, Jeffrey L" sort="Thorne, Jeffrey L" uniqKey="Thorne J" first="Jeffrey L" last="Thorne">Jeffrey L. Thorne</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biological Sciences and Department of Statistics, North Carolina State University, Raleigh, NC 27695, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences and Department of Statistics, North Carolina State University, Raleigh, NC 27695</wicri:regionArea><placeName><region type="state">Caroline du Nord</region></placeName></affiliation></author><author><name sortKey="Ristaino, Jean B" sort="Ristaino, Jean B" uniqKey="Ristaino J" first="Jean B" last="Ristaino">Jean B. Ristaino</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA. jean_ristaino@ncsu.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695</wicri:regionArea><wicri:noRegion>27695</wicri:noRegion></affiliation></author></analytic><series><title level="j">Current genetics</title><idno type="eISSN">1432-0983</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biological Evolution (MeSH)</term><term>Chimera (microbiology)</term><term>Colombia (MeSH)</term><term>DNA, Mitochondrial (genetics)</term><term>Ecuador (MeSH)</term><term>Genome, Mitochondrial (MeSH)</term><term>Lycopersicon esculentum (microbiology)</term><term>Mitochondria (genetics)</term><term>Peru (MeSH)</term><term>Phylogeny (MeSH)</term><term>Phylogeography (MeSH)</term><term>Phytophthora (classification)</term><term>Phytophthora (genetics)</term><term>Phytophthora infestans (classification)</term><term>Phytophthora infestans (genetics)</term><term>Plant Diseases (microbiology)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Solanum tuberosum (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN mitochondrial (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chimère (microbiologie)</term><term>Colombie (MeSH)</term><term>Génome mitochondrial (MeSH)</term><term>Lycopersicon esculentum (microbiologie)</term><term>Maladies des plantes (microbiologie)</term><term>Mitochondries (génétique)</term><term>Phylogenèse (MeSH)</term><term>Phylogéographie (MeSH)</term><term>Phytophthora (classification)</term><term>Phytophthora (génétique)</term><term>Phytophthora infestans (classification)</term><term>Phytophthora infestans (génétique)</term><term>Pérou (MeSH)</term><term>Solanum tuberosum (microbiologie)</term><term>Équateur (MeSH)</term><term>Évolution biologique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Mitochondrial</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Colombia</term><term>Ecuador</term><term>Peru</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Phytophthora</term><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mitochondria</term><term>Phytophthora</term><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN mitochondrial</term><term>Mitochondries</term><term>Phytophthora</term><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Chimère</term><term>Lycopersicon esculentum</term><term>Maladies des plantes</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Chimera</term><term>Lycopersicon esculentum</term><term>Plant Diseases</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biological Evolution</term><term>Genome, Mitochondrial</term><term>Phylogeny</term><term>Phylogeography</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Colombie</term><term>Génome mitochondrial</term><term>Phylogenèse</term><term>Phylogéographie</term><term>Pérou</term><term>Équateur</term><term>Évolution biologique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Colombie</term><term>Équateur</term><term>Pérou</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora infestans is one of the most destructive plant pathogens of potato and tomato globally. The pathogen is closely related to four other Phytophthora species in the 1c clade including P. phaseoli, P. ipomoeae, P. mirabilis and P. andina that are important pathogens of other wild and domesticated hosts. P. andina is an interspecific hybrid between P. infestans and an unknown Phytophthora species. We have sequenced mitochondrial genomes of the sister species of P. infestans and examined the evolutionary relationships within the clade. Phylogenetic analysis indicates that the P. phaseoli mitochondrial lineage is basal within the clade. P. mirabilis and P. ipomoeae are sister lineages and share a common ancestor with the Ic mitochondrial lineage of P. andina. These lineages in turn are sister to the P. infestans and P. andina Ia mitochondrial lineages. The P. andina Ic lineage diverged much earlier than the P. andina Ia mitochondrial lineage and P. infestans. The presence of two mitochondrial lineages in P. andina supports the hybrid nature of this species. The ancestral state of the P. andina Ic lineage in the tree and its occurrence only in the Andean regions of Ecuador, Colombia and Peru suggests that the origin of this species hybrid in nature may occur there. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25754775</PMID><DateCompleted><Year>2016</Year><Month>08</Month><Day>02</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-0983</ISSN><JournalIssue CitedMedium="Internet"><Volume>61</Volume><Issue>4</Issue><PubDate><Year>2015</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Current genetics</Title><ISOAbbreviation>Curr Genet</ISOAbbreviation></Journal><ArticleTitle>Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species.</ArticleTitle><Pagination><MedlinePgn>567-77</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00294-015-0480-3</ELocationID><Abstract><AbstractText>Phytophthora infestans is one of the most destructive plant pathogens of potato and tomato globally. The pathogen is closely related to four other Phytophthora species in the 1c clade including P. phaseoli, P. ipomoeae, P. mirabilis and P. andina that are important pathogens of other wild and domesticated hosts. P. andina is an interspecific hybrid between P. infestans and an unknown Phytophthora species. We have sequenced mitochondrial genomes of the sister species of P. infestans and examined the evolutionary relationships within the clade. Phylogenetic analysis indicates that the P. phaseoli mitochondrial lineage is basal within the clade. P. mirabilis and P. ipomoeae are sister lineages and share a common ancestor with the Ic mitochondrial lineage of P. andina. These lineages in turn are sister to the P. infestans and P. andina Ia mitochondrial lineages. The P. andina Ic lineage diverged much earlier than the P. andina Ia mitochondrial lineage and P. infestans. The presence of two mitochondrial lineages in P. andina supports the hybrid nature of this species. The ancestral state of the P. andina Ic lineage in the tree and its occurrence only in the Andean regions of Ecuador, Colombia and Peru suggests that the origin of this species hybrid in nature may occur there. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lassiter</LastName><ForeName>Erica S</ForeName><Initials>ES</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, North Carolina State University, Raleigh, NC, 27695, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Russ</LastName><ForeName>Carsten</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>BROAD Institute, MIT, Cambridge, MA, 02142, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nusbaum</LastName><ForeName>Chad</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>BROAD Institute, MIT, Cambridge, MA, 02142, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zeng</LastName><ForeName>Qiandong</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>BROAD Institute, MIT, Cambridge, MA, 02142, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Saville</LastName><ForeName>Amanda C</ForeName><Initials>AC</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Olarte</LastName><ForeName>Rodrigo A</ForeName><Initials>RA</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Carbone</LastName><ForeName>Ignazio</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Chia-Hui</ForeName><Initials>CH</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Seguin-Orlando</LastName><ForeName>Andaine</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Samaniego</LastName><ForeName>Jose A</ForeName><Initials>JA</Initials><AffiliationInfo><Affiliation>Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Thorne</LastName><ForeName>Jeffrey L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences and Department of Statistics, North Carolina State University, Raleigh, NC 27695, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ristaino</LastName><ForeName>Jean B</ForeName><Initials>JB</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA. jean_ristaino@ncsu.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>R01 GM070806</GrantID><Acronym>GM</Acronym><Agency>NIGMS NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>GM070806</GrantID><Acronym>GM</Acronym><Agency>NIGMS NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>03</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Curr Genet</MedlineTA><NlmUniqueID>8004904</NlmUniqueID><ISSNLinking>0172-8083</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004272">DNA, Mitochondrial</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D005075" MajorTopicYN="N">Biological Evolution</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002678" MajorTopicYN="N">Chimera</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003105" MajorTopicYN="N" Type="Geographic">Colombia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004272" MajorTopicYN="N">DNA, Mitochondrial</DescriptorName><QualifierName UI="Q000235" 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uniqKey="Lassiter E" first="Erica S" last="Lassiter">Erica S. 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Saville</name><name sortKey="Thorne, Jeffrey L" sort="Thorne, Jeffrey L" uniqKey="Thorne J" first="Jeffrey L" last="Thorne">Jeffrey L. Thorne</name><name sortKey="Zeng, Qiandong" sort="Zeng, Qiandong" uniqKey="Zeng Q" first="Qiandong" last="Zeng">Qiandong Zeng</name></country><country name="Danemark"><region name="Hovedstaden"><name sortKey="Seguin Orlando, Andaine" sort="Seguin Orlando, Andaine" uniqKey="Seguin Orlando A" first="Andaine" last="Seguin-Orlando">Andaine Seguin-Orlando</name></region><name sortKey="Samaniego, Jose A" sort="Samaniego, Jose A" uniqKey="Samaniego J" first="Jose A" last="Samaniego">Jose A. Samaniego</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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